Turbidity shapes shallow Southwestern Atlantic benthic reef communities.

Southwestern Atlantic reefs (Brazilian Province) occur along a broad latitudinal range (∼5°N-27°S) and under varied environmental conditions. We combined large-scale benthic cover and environmental data into uni- and multivariate regression tree analyses to identify unique shallow (<30 m) benthic reef communities and their environmental drivers along the Brazilian Province. Turbidity was the leading environmental driver of benthic reef communities, with the occurrence of two main groups: clear-water (dominated by fleshy macroalgae) and turbid (dominated by turf algae). Seven out of 14 scleractinian coral species were more abundant in the turbid group, thus corroborating the photophobic nature of some Brazilian corals. The most abundant scleractinian in Brazil (Montastraea cavernosa), largely dominated (71-93% of total coral cover) both, the shallow turbid and deeper clear-water reefs. Because these habitat types are widely recognized as potential climate refuges, local threats (e.g. pollution, overfishing) should be averted.

Dynamic mapping of the probability of infestation by urban arbovirus vectors in the municipalities of Rio Grande do Sul state, Brazil, 2016-2017. / Mapeamento dinâmico da probabilidade de infestação por vetores urbanos de arbovírus nos municípios do Rio Grande do Sul, 2016-2017.

OBJECTIVE: To compare official mapping with probabilistic mapping of infestation by Aedes spp. in the municipalities of Rio Grande do Sul state, Brazil. METHODS: This was an ecological study using data from samples of mosquito breeding sites collected in 2016-2017; official classification was obtained from epidemiological reports, and infestation per municipality and week was estimated by fitting a dynamic site-occupancy model to data from municipal epidemiological surveillance. RESULTS: 187,245 samples collected in 473 municipalities returned 10,648 detections of Aedes aegypti, and 8,414 detections of Aedes albopictus; official mapping agrees with probabilistic mapping in municipalities in the northwestern and western regions of the state. The mappings are not in agreement in the eastern, central, northeastern and southern regions, revealing municipalities officially not infested but with high probability of infestation and notification of arbovirus infection. CONCLUSION: While official classification identified critically infested municipalities in the state's northwestern and western regions, it did not identify infestation in municipalities with possible false zero errors and where infestation varies over time.

Dynamic mapping of the probability of infestation by arbovirus urban vectors in the municipalities of Rio Grande do Sul state, Brazil, 2016-2017 / Mapeo dinámico de la probabilidad de infestación por vectores urbanos de arbovirus en los municipios de Rio Grande do Sul, Brasil, 2016-2017 / Mapeamento dinâmico da probabilidade de infestação por vetores urbanos de arbovírus nos municípios do Rio Grande do Sul, 2016-2017

Objective: To compare the official mapping with the probabilistic mapping of infestation by Aedes spp. in Rio Grande do Sul municipalities, Brazil. Methods: Ecological study analyzing samples of mosquito breeding sites collected in 2016-2017; official classification was obtained from epidemiological reports, and infestation per municipality and week was estimated by fitting a dynamic site-occupancy model to data from municipal epidemiological surveillance. Results: 187,245 samples collected in 473 municipalities returned 10,648 detections of Aedes aegypti, and 8,414 detections of Aedes albopictus.; official mapping agrees with the probabilistic mapping in municipalities from northwestern and western regions. These mappings disagree in eastern, center, northeastern and southern regions, revealing municipalities not officially infested with high infestation probability and notification of arbovirus. Conclusion: While official classification correctly identifies critically infested municipalities from northwestern and western regions, it did not identify infestation in municipalities with false negative errors and where infestation varies over time.

Objetivo: Comparar o mapeamento oficial com um mapeamento probabilístico da infestação por Aedes spp. nos municípios do Rio Grande do Sul, Brasil. Métodos: Estudo ecológico com dados de amostras de criadouros em 2016-2017; obteve-se a classificação oficial em boletins epidemiológicos e estimou-se a probabilidade de infestação por município e semana, ajustando-se um modelo dinâmico de ocupação de sítios aos dados da vigilância epidemiológica municipal. Resultados: 187.245 amostras coletadas em 473 municípios originaram 10.648 detecções de Aedes aegypti e 8.414 de Aedes albopictus; o mapeamento oficial concorda com o probabilístico em municípios da região noroeste e oeste do RS; os mapeamentos discordam nas regiões leste, centro, nordeste e sul, revelando municípios oficialmente não infestados com alta probabilidade de infestação e notificação de arboviroses. Conclusão: A classificação oficial identificou infestação nos municípios infestados do noroeste e oeste; e não identificou infestação em municípios com possíveis falsos zeros e onde ela varia temporalmente.

Is evolution faster at ecotones? A test using rates and tempo of diet transitions in Neotropical Sigmodontinae (Rodentia, Cricetidae).

We evaluated whether evolution is faster at ecotones as niche shifts may be needed to persist under unstable environment. We mapped diet evolution along the evolutionary history of 350 sigmodontine species. Mapping was used in three new tip-based metrics of trait evolution - Transition Rates, Stasis Time, and Last Transition Time - which were spatialized at the assemblage level (aTR, aST, aTL). Assemblages were obtained by superimposing range maps on points located at core and ecotone of the 93 South American ecoregions. Using Linear Mixed Models, we tested whether ecotones have species with more changes from the ancestral diet (higher aTR), have maintained the current diet for a shorter time (lower aST), and have more recent transitions to the current diet (lower aLT) than cores. We found lower aTR, and higher aST and aLT at ecotones than at cores. Although ecotones are more heterogeneous, both environmentally and in relation to selection pressures they exert on organisms, ecotone species change little from the ancestral diet as generalist habits are necessary toward feeding in ephemeral environments. The need to incorporate phylogenetic uncertainty in tip-based metrics was evident from large uncertainty detected. Our study integrates ecology and evolution by analyzing how fast trait evolution is across space.

Mapeamento dinâmico da probabilidade de infestação por vetores urbanos de arbovírus nos municípios do Rio Grande do Sul, 2016-2017 / Mapeo dinámico de la probabilidad de infestación por vectores urbanos de arbovirus en los municipios de Rio Grande do Sul, Brasil, 2016-2017 / Dynamic mapping of the probability of infestation by urban arbovirus vectors in the municipalities of Rio Grande do Sul state, Brazil, 2016-2017

Objetivo: Comparar o mapeamento oficial com um mapeamento probabilístico da infestação por Aedes spp. nos municípios do Rio Grande do Sul, Brasil. Métodos: Estudo ecológico com dados de amostras de criadouros em 2016-2017; obteve-se a classificação oficial em boletins epidemiológicos e estimou-se a probabilidade de infestação por município e semana, ajustando-se um modelo dinâmico de ocupação de sítios aos dados da vigilância epidemiológica municipal. Resultados: 187.245 amostras coletadas em 473 municípios originaram 10.648 detecções de Aedes aegypti e 8.414 de Aedes albopictus; o mapeamento oficial concorda com o probabilístico em municípios da região noroeste e oeste do RS; os mapeamentos discordam nas regiões leste, centro, nordeste e sul, revelando municípios oficialmente não infestados com alta probabilidade de infestação e notificação de arboviroses. Conclusão: A classificação oficial identificou infestação nos municípios infestados do noroeste e oeste, e não identificou infestação em municípios com possíveis falsos zeros e onde ela varia temporalmente.

Objetivo: Comparar el mapeo oficial con un mapeo probabilístico de infestación por Aedes spp. en los municipios de Rio Grande do Sul, Brasil. Métodos: Estudio ecológico analizando muestras colectadas en criaderos en 2016-2017; se obtuvo la clasificación oficial en boletines epidemiológicos, y la probabilidad de infestación por municipio y semana ajustando un modelo dinámico de ocupación de sitios a los datos de la vigilancia epidemiológica municipal. Resultados: 187.245 muestras de 473 municipios generaron 10.648 detecciones de Aedes aegypti y 8.414 detecciones de Aedes albopictus. El mapeo oficial está de acuerdo con el probabilístico en municipios del noroeste y oeste de RS; los mapeos no concuerdan en el este, centro, nordeste y sur, revelando municipios oficialmente no infestados con alta probabilidad de infestación y notificación de arbovirus. Conclusión: Mientras la clasificación oficial identifica municipios del noroeste y oeste infestados críticamente, no identifica infestación en municipios con posiblemente falsos ceros y en donde la infestación varía temporalmente.

Objective: To compare official mapping with probabilistic mapping of infestation by Aedes spp. in the municipalities of Rio Grande do Sul state, Brazil. Methods: This was an ecological study using data from samples of mosquito breeding sites collected in 2016-2017; official classification was obtained from epidemiological reports, and infestation per municipality and week was estimated by fitting a dynamic site-occupancy model to data from municipal epidemiological surveillance. Results: 187,245 samples collected in 473 municipalities returned 10,648 detections of Aedes aegypti, and 8,414 detections of Aedes albopictus; official mapping agrees with probabilistic mapping in municipalities in the northwestern and western regions of the state. The mappings are not in agreement in the eastern, central, northeastern and southern regions, revealing municipalities officially not infested but with high probability of infestation and notification of arbovirus infection. Conclusion: While official classification identified critically infested municipalities in the state's northwestern and western regions, it did not identify infestation in municipalities with possible false zero errors and where infestation varies over time.

Neotropical carnivores: a data set on carnivore distribution in the Neotropics

Mammalian carnivores are considered a key group in maintaining ecological health and can indicate potential ecological integrity in landscapes where they occur. Carnivores also hold high conservation value and their habitat requirements can guide management and conservation plans. The order Carnivora has 84 species from 8 families in the Neotropical region: Canidae; Felidae; Mephitidae; Mustelidae; Otariidae; Phocidae; Procyonidae; and Ursidae. Herein, we include published and unpublished data on native terrestrial Neotropical carnivores (Canidae; Felidae; Mephitidae; Mustelidae; Procyonidae; and Ursidae). NEOTROPICAL CARNIVORES is a publicly available data set that includes 99,605 data entries from 35,511 unique georeferenced coordinates. Detection/non‐detection and quantitative data were obtained from 1818 to 2018 by researchers, governmental agencies, non‐governmental organizations, and private consultants. Data were collected using several methods including camera trapping, museum collections, roadkill, line transect, and opportunistic records. Literature (peerreviewed and grey literature) from Portuguese, Spanish and English were incorporated in this compilation. Most of the data set consists of detection data entries (n = 79,343; 79.7%) but also includes non‐detection data (n = 20,262; 20.3%). Of those, 43.3% also include count data (n = 43,151). The information available in NEOTROPICAL CARNIVORES will contribute to macroecological, ecological, and conservation questions in multiple spatio‐temporal perspectives. As carnivores play key roles in trophic interactions, a better understanding of their distribution and habitat requirements are essential to establish conservation management plans and safeguard the future ecological health of Neotropical ecosystems. Our data paper, combined with other largescale data sets, has great potential to clarify species distribution and related ecological processes within the Neotropics. There are no copyright restrictions and no restriction for using data from this data paper, as long as the data paper is cited as the source of the information used. We also request that users inform us of how they intend to use the data.

Database of bird species composition in natural habitats and forest plantations.

In southeastern South America, the afforestation over grasslands imposes a severe threat to the grassy landscapes and associated biodiversity. To analyze the effect of forest plantations on grassland birds, we present a new database that considers the composition of bird communities in natural habitats, as well as in eucalyptus plantations from the southeastern South American grasslands. Data were previously used to investigate the effectiveness of legally protected grasslands in private lands to protect birds in "Bird-grassland associations in protected and non-protected areas in the southern Brazil" [1] and also the effects of afforestation of grasslands on different dimensions of bird diversity in "The effects of grassland ecosystem afforestation on avian phylogenetic diversity, taxonomic diversity and evolutionary distinctiveness" [2]. Data were collected during the breeding period of bird species (spring/austral summer), covering three breeding seasons during the years 2014-2016. Species presence and number of individuals were recorded, totaling 107 species and 1175 individuals. The dataset will be useful for researchers interested in conservation studies as it includes data from globally threatened bird species.

A global database on non-volant small mammal composition in natural and human-modified habitats.

Non-volant small mammals, which include small-bodied representatives from several mammal orders, have been used as a model group to test the effects of habitat conversion and edge creation on biodiversity. Small mammals occupy a large variety of habitat types and vegetation strata, and have varied lifestyles and diets. They include species with slow-to fast-life history (the Etruscan shrew Suncus etruscus and European Hare Lepus europaeus, respectively) and with very specialized to very generalist habits and diets (the Atlantic bamboo rat Kannabateomys amblyonyx and house mouse Mus musculus, respectively). There are no databases with global coverage focusing on small mammal composition in natural and human-modified habitats and that include neglected natural habitats (e.g. grasslands and savannas). Here, peer-reviewed articles were searched in the primary literature to synthesize almost half century (1973-2017) of research on small mammal composition in natural forests, grasslands and their natural edges, and in five types of human-modified habitats (human-induced forest edges, human-induced grassland edges, crop fields, clear-cuts and tree plantations). The complete database includes information from 199 peer-reviewed articles. Presence data were obtained for 534 species (including 30 unidentified) in 551 sites distributed in 45 countries, 92 ecoregions, 10 biomes and six realms. Measurements of sampling effort and number of species records (number of individuals, captures) per habitat were also obtained, from which researchers can calculate a measure of abundance standardized by the sampling effort. The database will be useful for researchers interested in local-to broad-scale patterns of alpha- and beta-diversity in natural and human-modified habitats.

Phylogenetic and morphological relationships between nonvolant small mammals reveal assembly processes at different spatial scales.

The relative roles of historical processes, environmental filtering, and ecological interactions in the organization of species assemblages vary depending on the spatial scale. We evaluated the phylogenetic and morphological relationships between species and individuals (i.e., inter- and intraspecific variability) of Neotropical nonvolant small mammals coexisting in grassland-forest ecotones, in landscapes and in regions, that is, three different scales. We used a phylogenetic tree to infer evolutionary relationships, and morphological traits as indicators of performance and niche similarities between species and individuals. Subsequently, we applied phylogenetic and morphologic indexes of diversity and distance between species to evaluate small mammal assemblage structures on the three scales. The results indicated a repulsion pattern near forest edges, showing that phylogenetically similar species coexisted less often than expected by chance. The strategies for niche differentiation might explain the phylogenetic repulsion observed at the edge. Phylogenetic and morphological clustering in the grassland and at the forest interior indicated the coexistence of closely related and ecologically similar species and individuals. Coexistence patterns were similar whether species-trait values or individual values were used. At the landscape and regional scales, assemblages showed a predominant pattern of phylogenetic and morphological clustering. Environmental filters influenced the coexistence patterns at three scales, showing the importance of phylogenetically conserved ecological tolerances in enabling taxa co-occurrence. Evidence of phylogenetic repulsion in one region indicated that other processes beyond environmental filtering are important for community assembly at broad scales. Finally, ecological interactions and environmental filtering seemed important at the local scale, while environmental filtering and historical colonization seemed important for community assembly at broader scales.